Publications

Research publications that have utilized DXKB resources.

2025
Scalable Agentic Reasoning for Designing Biologics Targeting Intrinsically Disordered Proteins

Matthew Sinclair, Moeen Meigooni, Archit Vasan, Ozan Gokdemir, Xinran Lian, Heng Ma, Yadu Babuji, Alexander Brace, Khalid Hossain, Carlo Siebenschuh, Thomas Brettin, Kyle Chard, Christopher Henry, Daniel Schabacker, Venkatram Vishwanath, Rick Stevens, Ian Foster, Arvind Ramanathan

DOI: 10.1145/3815572.3815764

High-resolution in situ structures of hantavirus glycoprotein tetramers

Luqiang Guo, Elizabeth McFadden, Megan M. Slough, E. Taylor Stone, Jacob Berrigan, Eva Mittler, Kiara Hatzakis, Troy Hinkley, Heather S. Kain, Zunlong Ke, Nikole L. Warner, Jesse H. Erasmus, Kartik Chandran, Jason S. McLellan

DOI: 10.1101/2025.06.17.660152

2024
MProt-DPO: Breaking the ExaFLOPS Barrier for Multimodal Protein Design Workflows with Direct Preference Optimization

Gautham Dharuman, Kyle Hippe, Alexander Brace, Sam Foreman, Vain Hatanp, Varuni K. Sastry, Huihuo Zheng, Logan Ward, Servesh Muralidharan, Archit Vasan, Bharat Kale, Carla M. Mann, Heng Ma, Yun-Hsuan Cheng, Yuliana Zamora, Shengchao Liu, Chaowei Xiao, Murali Emani, Tom Gibbs, Mahidhar Tatineni, Deepak Canchi, Jerome Mitchell, Koichi Yamada, Maria Garzaran, Michael E. Papka, Ian Foster, Rick Stevens, Anima Anandkumar, Venkatram Vishwanath, Arvind Ramanathan

DOI: 10.1109/SC41406.2024.00013

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